PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09361_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 489aa    MW: 54571.6 Da    PI: 9.2076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09361_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10315359554
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 h   Er+RR+++N++f+ Lr+llP+      +K + +++L  + eY+ sL
  Cotton_A_09361_BGI-A2_v1.0 315 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 359
                                 6778********************97.....79999**********9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-11312363No hitNo description
SuperFamilySSF474598.51E-15313378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13314377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8315359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP KGLVPGFAFR NYRPYIELGE  60
LELQSRASHQ TQRQFYREAR IKTAVFMGCK SGEIELGSPN AVNLNMEMEM RTFFPEDFSR  120
QSLVAVSEPT DPNNPSSSSS SLRSLATDSP DSYLIFTVPN ASRPQVPTGS ETTPSLLQAK  180
PASSSMYDPH QQAMQQALSE MRSNINLPSL ESENAAMTRA ILAVLTSPSS SSSSTSQYHS  240
QQSHNLPPSY QPNSKATAFK RYGSPLGTPT TAAVRASLRA QSMLKRAILF YRRFNLVRSE  300
QQPRRRAPTV HQLHHMLSER KRREKLNESF DALRSLLPPG TKKDRVSVLA STREYLTSLK  360
SQIMELNRQN QLLEAAQASA TSADEANGSS NERLNIRIIP VPESTSEQRI IELRVSVGGE  420
VSIVDILIQL LQFLKLDRNI SLMSTEANTR TAELGSINHV NLRFRIEGDD WDESTFQEAV  480
RRILADLAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303322RRRAPTVHQLHHMLSERKRR
2318323ERKRRE
3319324RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440726.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0D2UFH10.0A0A0D2UFH1_G
STRINGVIT_11s0016g02070.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-63bHLH family protein